Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.67
UPK3BQ9BT76 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC10.84□□□□□ -0.67
UPK3BQ9BT76 ING5-213ENST00000636051 4199 ntTSL 5 BASIC10.84□□□□□ -0.67
UPK3BQ9BT76 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC10.84□□□□□ -0.67
UPK3BQ9BT76 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
UPK3BQ9BT76 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AL596087.1-201ENST00000400979 1969 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 NSL1-201ENST00000366976 722 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 USP40-206ENST00000443711 628 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 RBM7-207ENST00000544582 692 ntTSL 3 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC023310.3-201ENST00000557027 670 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC100756.1-201ENST00000562736 682 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AL596325.1-201ENST00000563991 1082 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC138749.3-201ENST00000567691 622 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC239800.4-201ENST00000603712 296 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 AC116165.1-201ENST00000611806 668 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 TNRC18P2-201ENST00000417666 2714 ntBASIC10.83□□□□□ -0.68
UPK3BQ9BT76 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
UPK3BQ9BT76 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 IFRD1-205ENST00000429071 1938 ntTSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 AC138969.3-201ENST00000546612 1459 ntBASIC10.82□□□□□ -0.68
UPK3BQ9BT76 AC138932.2-201ENST00000548268 1459 ntBASIC10.82□□□□□ -0.68
UPK3BQ9BT76 AC126755.4-201ENST00000549796 1459 ntBASIC10.82□□□□□ -0.68
UPK3BQ9BT76 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 COG8-206ENST00000306875 4247 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
UPK3BQ9BT76 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms