Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 FAM8A3P-201ENST00000427218 844 ntBASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 MIR6069-201ENST00000620069 79 ntBASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 AL033527.5-202ENST00000641632 1098 ntBASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 REXO1L4P-201ENST00000605109 1937 ntBASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 AC211486.1-202ENST00000416371 468 ntBASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 AC211476.1-201ENST00000503899 468 ntBASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 AC027612.4-201ENST00000605371 583 ntBASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 AC018529.2-202ENST00000611482 3087 ntBASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ATG4AQ8WYN0 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 SPDYE7P-202ENST00000420373 878 ntBASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 RPL13P2-201ENST00000440687 659 ntBASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.02■□□□□ 0.16
ATG4AQ8WYN0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms