Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 ZEB1-AS1-208ENST00000607166 2503 ntBASIC23.75■■□□□ 1.39
VPS8Q8N3P4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 CHMP1AP1-201ENST00000445563 662 ntBASIC23.75■■□□□ 1.39
VPS8Q8N3P4 HIST2H2BB-201ENST00000449108 381 ntBASIC23.75■■□□□ 1.39
VPS8Q8N3P4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 ACR-203ENST00000529621 708 ntTSL 5 BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 RN7SL560P-201ENST00000577943 264 ntBASIC23.75■■□□□ 1.39
VPS8Q8N3P4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC23.75■■□□□ 1.39
VPS8Q8N3P4 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 HSPB1P2-201ENST00000448722 546 ntBASIC23.74■■□□□ 1.39
VPS8Q8N3P4 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
VPS8Q8N3P4 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 FAM86MP-201ENST00000340703 885 ntBASIC23.73■■□□□ 1.39
VPS8Q8N3P4 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 GOLGA2P4-201ENST00000441462 777 ntBASIC23.73■■□□□ 1.39
VPS8Q8N3P4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AC092658.1-201ENST00000505836 891 ntBASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 NCK2-206ENST00000522586 490 ntTSL 5 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
VPS8Q8N3P4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 TLE1P1-201ENST00000422965 589 ntBASIC23.72■■□□□ 1.39
VPS8Q8N3P4 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
VPS8Q8N3P4 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
VPS8Q8N3P4 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
VPS8Q8N3P4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
VPS8Q8N3P4 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms