Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 NAT9-224ENST00000583757 583 ntTSL 3 BASIC19.02■□□□□ 0.64
SYNE4Q8N205 NDUFV2P1-201ENST00000596415 907 ntBASIC19.02■□□□□ 0.64
SYNE4Q8N205 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.02■□□□□ 0.64
SYNE4Q8N205 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC19.02■□□□□ 0.64
SYNE4Q8N205 AL365203.3-201ENST00000609742 2057 ntBASIC19.02■□□□□ 0.63
SYNE4Q8N205 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE4Q8N205 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
SYNE4Q8N205 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE4Q8N205 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
SYNE4Q8N205 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 DOC2GP-204ENST00000639052 2548 ntBASIC19.01■□□□□ 0.63
SYNE4Q8N205 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 SMS-201ENST00000379404 1174 ntTSL 3 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.01■□□□□ 0.63
SYNE4Q8N205 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 MIR4706-201ENST00000582134 82 ntBASIC19.01■□□□□ 0.63
SYNE4Q8N205 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.01■□□□□ 0.63
SYNE4Q8N205 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
SYNE4Q8N205 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19■□□□□ 0.63
SYNE4Q8N205 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
SYNE4Q8N205 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC19■□□□□ 0.63
SYNE4Q8N205 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19■□□□□ 0.63
SYNE4Q8N205 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC19■□□□□ 0.63
SYNE4Q8N205 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SYNE4Q8N205 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19■□□□□ 0.63
SYNE4Q8N205 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SYNE4Q8N205 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC19■□□□□ 0.63
SYNE4Q8N205 IMP3P2-201ENST00000489760 475 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 AC044849.1-201ENST00000519737 1188 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19■□□□□ 0.63
SYNE4Q8N205 MIR4683-201ENST00000579659 81 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC19■□□□□ 0.63
SYNE4Q8N205 AC097724.1-201ENST00000609581 426 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 AC138466.3-201ENST00000619983 221 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 AP001002.3-201ENST00000623482 206 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC19■□□□□ 0.63
SYNE4Q8N205 AC008894.3-201ENST00000624324 3103 ntBASIC19■□□□□ 0.63
SYNE4Q8N205 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19■□□□□ 0.63
SYNE4Q8N205 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SYNE4Q8N205 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 AC091046.1-201ENST00000331871 207 ntBASIC18.99■□□□□ 0.63
SYNE4Q8N205 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 KLK3-207ENST00000595952 969 ntTSL 3 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 AC244157.2-201ENST00000616239 1006 ntBASIC18.99■□□□□ 0.63
SYNE4Q8N205 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SYNE4Q8N205 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SYNE4Q8N205 AL360270.3-201ENST00000609118 1348 ntBASIC18.99■□□□□ 0.63
SYNE4Q8N205 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SYNE4Q8N205 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms