Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 KHSRPP1-201ENST00000427983 1768 ntBASIC19.95■□□□□ 0.78
USP54Q70EL1 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USP54Q70EL1 AC136759.1-202ENST00000530858 2194 ntBASIC19.95■□□□□ 0.78
USP54Q70EL1 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USP54Q70EL1 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC19.94■□□□□ 0.78
USP54Q70EL1 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.94■□□□□ 0.78
USP54Q70EL1 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC19.94■□□□□ 0.78
USP54Q70EL1 AC009884.2-201ENST00000603110 324 ntBASIC19.94■□□□□ 0.78
USP54Q70EL1 AL109837.1-201ENST00000603272 613 ntBASIC19.94■□□□□ 0.78
USP54Q70EL1 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC19.94■□□□□ 0.78
USP54Q70EL1 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
USP54Q70EL1 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
USP54Q70EL1 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC19.94■□□□□ 0.78
USP54Q70EL1 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 FRMPD2B-201ENST00000431305 1347 ntBASIC19.94■□□□□ 0.78
USP54Q70EL1 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 AC026316.1-201ENST00000398900 414 ntBASIC19.94■□□□□ 0.78
USP54Q70EL1 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.94■□□□□ 0.78
USP54Q70EL1 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USP54Q70EL1 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC19.94■□□□□ 0.78
USP54Q70EL1 TMCO5B-205ENST00000530020 894 ntBASIC19.94■□□□□ 0.78
USP54Q70EL1 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.94■□□□□ 0.78
USP54Q70EL1 MIR5572-201ENST00000583188 137 ntBASIC19.94■□□□□ 0.78
USP54Q70EL1 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC19.94■□□□□ 0.78
USP54Q70EL1 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
USP54Q70EL1 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC19.93■□□□□ 0.78
USP54Q70EL1 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.93■□□□□ 0.78
USP54Q70EL1 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
USP54Q70EL1 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC19.93■□□□□ 0.78
USP54Q70EL1 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC19.93■□□□□ 0.78
USP54Q70EL1 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 AC239868.1-201ENST00000369385 493 ntBASIC19.93■□□□□ 0.78
USP54Q70EL1 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC19.93■□□□□ 0.78
USP54Q70EL1 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 MPRIPP1-201ENST00000452433 1089 ntBASIC19.93■□□□□ 0.78
USP54Q70EL1 IGLV3-15-201ENST00000518356 244 ntBASIC19.93■□□□□ 0.78
USP54Q70EL1 AC026803.1-201ENST00000569130 274 ntBASIC19.93■□□□□ 0.78
USP54Q70EL1 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC19.93■□□□□ 0.78
USP54Q70EL1 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC19.93■□□□□ 0.78
USP54Q70EL1 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC19.93■□□□□ 0.78
USP54Q70EL1 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USP54Q70EL1 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC19.92■□□□□ 0.78
USP54Q70EL1 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC19.92■□□□□ 0.78
USP54Q70EL1 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.92■□□□□ 0.78
USP54Q70EL1 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 RPSAP31-201ENST00000416648 895 ntBASIC19.92■□□□□ 0.78
USP54Q70EL1 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC19.92■□□□□ 0.78
USP54Q70EL1 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.92■□□□□ 0.78
USP54Q70EL1 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC19.92■□□□□ 0.78
USP54Q70EL1 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
USP54Q70EL1 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
USP54Q70EL1 NAT9-211ENST00000580632 799 ntTSL 3 BASIC19.92■□□□□ 0.78
USP54Q70EL1 U62317.3-201ENST00000608319 855 ntBASIC19.92■□□□□ 0.78
USP54Q70EL1 AC007881.3-201ENST00000608897 607 ntBASIC19.92■□□□□ 0.78
USP54Q70EL1 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
USP54Q70EL1 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 UBXN11-202ENST00000357089 1555 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USP54Q70EL1 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USP54Q70EL1 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.92■□□□□ 0.78
USP54Q70EL1 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms