Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.81□□□□□ -0.2
H3F3AP84243 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
H3F3AP84243 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC13.81□□□□□ -0.2
H3F3AP84243 AC134915.1-201ENST00000426461 574 ntBASIC13.81□□□□□ -0.2
H3F3AP84243 VDAC1P7-201ENST00000462417 847 ntBASIC13.81□□□□□ -0.2
H3F3AP84243 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC13.81□□□□□ -0.2
H3F3AP84243 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.81□□□□□ -0.2
H3F3AP84243 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.81□□□□□ -0.2
H3F3AP84243 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.81□□□□□ -0.2
H3F3AP84243 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC13.81□□□□□ -0.2
H3F3AP84243 AC093813.1-201ENST00000605066 256 ntBASIC13.81□□□□□ -0.2
H3F3AP84243 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC13.81□□□□□ -0.2
H3F3AP84243 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
H3F3AP84243 AC007431.3-201ENST00000623221 587 ntBASIC13.81□□□□□ -0.2
H3F3AP84243 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.81□□□□□ -0.2
H3F3AP84243 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.81□□□□□ -0.2
H3F3AP84243 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.81□□□□□ -0.2
H3F3AP84243 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
H3F3AP84243 AC148477.4-201ENST00000613430 1793 ntBASIC13.81□□□□□ -0.2
H3F3AP84243 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
H3F3AP84243 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 AC023024.2-201ENST00000623561 1993 ntBASIC13.8□□□□□ -0.2
H3F3AP84243 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.8□□□□□ -0.2
H3F3AP84243 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC13.8□□□□□ -0.2
H3F3AP84243 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.8□□□□□ -0.2
H3F3AP84243 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 GALT-202ENST00000450095 1280 ntTSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC13.8□□□□□ -0.2
H3F3AP84243 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.8□□□□□ -0.2
H3F3AP84243 AC124283.3-201ENST00000570869 594 ntBASIC13.8□□□□□ -0.2
H3F3AP84243 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.8□□□□□ -0.2
H3F3AP84243 CTBP2P3-201ENST00000585629 1255 ntBASIC13.8□□□□□ -0.2
H3F3AP84243 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC13.8□□□□□ -0.2
H3F3AP84243 AC008494.3-201ENST00000606615 944 ntBASIC13.8□□□□□ -0.2
H3F3AP84243 AC107373.2-201ENST00000607735 490 ntBASIC13.8□□□□□ -0.2
H3F3AP84243 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
H3F3AP84243 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.8□□□□□ -0.2
H3F3AP84243 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
H3F3AP84243 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
H3F3AP84243 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC13.79□□□□□ -0.2
H3F3AP84243 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 AL138799.1-201ENST00000448213 1675 ntBASIC13.79□□□□□ -0.2
H3F3AP84243 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
H3F3AP84243 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC13.79□□□□□ -0.2
H3F3AP84243 C1R-202ENST00000536053 2347 ntTSL 2 BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 281 ms