Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 BNIP3P1-202ENST00000550043 1585 ntBASIC11.67□□□□□ -0.54
FOXA3P55318 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AC073439.1-201ENST00000624121 1774 ntBASIC11.67□□□□□ -0.54
FOXA3P55318 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 MBLAC2-202ENST00000514906 1936 ntBASIC11.67□□□□□ -0.54
FOXA3P55318 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC11.67□□□□□ -0.54
FOXA3P55318 KRT18P31-201ENST00000506277 1292 ntBASIC11.67□□□□□ -0.54
FOXA3P55318 IGHV3-65-201ENST00000523210 341 ntBASIC11.67□□□□□ -0.54
FOXA3P55318 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC11.67□□□□□ -0.54
FOXA3P55318 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
FOXA3P55318 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 AC092135.3-201ENST00000624151 1846 ntBASIC11.67□□□□□ -0.54
FOXA3P55318 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
FOXA3P55318 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
FOXA3P55318 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC11.67□□□□□ -0.54
FOXA3P55318 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC11.66□□□□□ -0.54
FOXA3P55318 AC113367.3-201ENST00000508316 1912 ntBASIC11.66□□□□□ -0.54
FOXA3P55318 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
FOXA3P55318 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 KRT18P27-201ENST00000427733 1299 ntBASIC11.66□□□□□ -0.54
FOXA3P55318 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC11.66□□□□□ -0.54
FOXA3P55318 AC109635.5-201ENST00000533593 962 ntBASIC11.66□□□□□ -0.54
FOXA3P55318 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 CYGB-205ENST00000590175 830 ntTSL 3 BASIC11.66□□□□□ -0.54
FOXA3P55318 ACTL9-202ENST00000612068 1252 ntBASIC11.66□□□□□ -0.54
FOXA3P55318 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC11.66□□□□□ -0.54
FOXA3P55318 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
FOXA3P55318 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 ZNF541-202ENST00000314121 4631 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
FOXA3P55318 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC11.66□□□□□ -0.54
FOXA3P55318 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
FOXA3P55318 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC11.66□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms