Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
LIMK1P53667 FOS-202ENST00000535987 1402 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK1P53667 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC15.22■□□□□ 0.03
LIMK1P53667 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC15.22■□□□□ 0.03
LIMK1P53667 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC15.22■□□□□ 0.03
LIMK1P53667 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
LIMK1P53667 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.21■□□□□ 0.03
LIMK1P53667 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
LIMK1P53667 MPV17-205ENST00000402310 906 ntTSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC15.21■□□□□ 0.03
LIMK1P53667 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.21■□□□□ 0.03
LIMK1P53667 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 AL590640.2-201ENST00000457038 527 ntBASIC15.21■□□□□ 0.03
LIMK1P53667 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC15.21■□□□□ 0.03
LIMK1P53667 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC15.21■□□□□ 0.03
LIMK1P53667 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC15.21■□□□□ 0.03
LIMK1P53667 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.21■□□□□ 0.03
LIMK1P53667 AC244157.2-201ENST00000616239 1006 ntBASIC15.21■□□□□ 0.03
LIMK1P53667 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.21■□□□□ 0.03
LIMK1P53667 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC15.21■□□□□ 0.03
LIMK1P53667 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
LIMK1P53667 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.21■□□□□ 0.02
LIMK1P53667 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.21■□□□□ 0.02
LIMK1P53667 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
LIMK1P53667 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LIMK1P53667 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.02
LIMK1P53667 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LIMK1P53667 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LIMK1P53667 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 TUBBP5-203ENST00000508529 1334 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 AC006480.2-201ENST00000609770 1337 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC15.2■□□□□ 0.02
LIMK1P53667 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LIMK1P53667 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LIMK1P53667 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LIMK1P53667 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LIMK1P53667 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIMK1P53667 NKAIN1P1-201ENST00000435754 582 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 RN7SL818P-201ENST00000485099 259 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.2■□□□□ 0.02
LIMK1P53667 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC15.2■□□□□ 0.02
LIMK1P53667 SDHD-202ENST00000525291 790 ntTSL 3 BASIC15.2■□□□□ 0.02
LIMK1P53667 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LIMK1P53667 IQSEC3P1-201ENST00000538799 536 ntBASIC15.2■□□□□ 0.02
LIMK1P53667 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms