Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC20.99■□□□□ 0.95
MSH6P52701 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH6P52701 AC026320.2-201ENST00000434379 478 ntBASIC20.98■□□□□ 0.95
MSH6P52701 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH6P52701 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 KLF2P1-201ENST00000447438 1042 ntBASIC20.98■□□□□ 0.95
MSH6P52701 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH6P52701 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC20.98■□□□□ 0.95
MSH6P52701 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 NAT9-220ENST00000582870 896 ntTSL 5 BASIC20.98■□□□□ 0.95
MSH6P52701 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 AC105137.3-201ENST00000617588 984 ntBASIC20.98■□□□□ 0.95
MSH6P52701 AC084018.2-201ENST00000613093 2607 ntBASIC20.98■□□□□ 0.95
MSH6P52701 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
MSH6P52701 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC20.98■□□□□ 0.95
MSH6P52701 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC20.98■□□□□ 0.95
MSH6P52701 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.98■□□□□ 0.95
MSH6P52701 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
MSH6P52701 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC20.98■□□□□ 0.95
MSH6P52701 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC20.97■□□□□ 0.95
MSH6P52701 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 HLA-K-203ENST00000430151 1046 ntBASIC20.97■□□□□ 0.95
MSH6P52701 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 SCARNA21-201ENST00000517026 139 ntBASIC20.97■□□□□ 0.95
MSH6P52701 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC20.97■□□□□ 0.95
MSH6P52701 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
MSH6P52701 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
MSH6P52701 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC20.97■□□□□ 0.95
MSH6P52701 CHCHD2P9-201ENST00000461726 456 ntBASIC20.97■□□□□ 0.95
MSH6P52701 NDUFS6P1-201ENST00000485187 316 ntBASIC20.97■□□□□ 0.95
MSH6P52701 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC20.97■□□□□ 0.95
MSH6P52701 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 C2orf69P1-201ENST00000563532 1093 ntBASIC20.97■□□□□ 0.95
MSH6P52701 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
MSH6P52701 AL157813.1-201ENST00000612996 587 ntBASIC20.97■□□□□ 0.95
MSH6P52701 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
MSH6P52701 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
MSH6P52701 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.96■□□□□ 0.95
MSH6P52701 AC244394.1-201ENST00000435000 1665 ntBASIC20.96■□□□□ 0.95
MSH6P52701 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
MSH6P52701 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH6P52701 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
MSH6P52701 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH6P52701 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH6P52701 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
MSH6P52701 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.96■□□□□ 0.95
MSH6P52701 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH6P52701 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
MSH6P52701 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC20.96■□□□□ 0.95
MSH6P52701 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
MSH6P52701 AC073911.3-201ENST00000624401 631 ntBASIC20.96■□□□□ 0.95
MSH6P52701 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC20.96■□□□□ 0.95
MSH6P52701 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
MSH6P52701 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms