Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 AC130709.1-201ENST00000484779 1212 ntBASIC17.77■□□□□ 0.44
CTCFP49711 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC17.77■□□□□ 0.44
CTCFP49711 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
CTCFP49711 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC17.77■□□□□ 0.44
CTCFP49711 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.77■□□□□ 0.44
CTCFP49711 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC17.77■□□□□ 0.44
CTCFP49711 AC011247.3-201ENST00000603297 438 ntBASIC17.77■□□□□ 0.44
CTCFP49711 AC073413.1-201ENST00000603927 732 ntBASIC17.77■□□□□ 0.44
CTCFP49711 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.77■□□□□ 0.44
CTCFP49711 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CTCFP49711 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.77■□□□□ 0.44
CTCFP49711 AC005622.1-201ENST00000636801 1703 ntBASIC17.77■□□□□ 0.44
CTCFP49711 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CTCFP49711 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTCFP49711 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
CTCFP49711 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CTCFP49711 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CTCFP49711 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.77■□□□□ 0.43
CTCFP49711 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTCFP49711 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CTCFP49711 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.77■□□□□ 0.43
CTCFP49711 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CTCFP49711 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CTCFP49711 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CTCFP49711 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC17.76■□□□□ 0.43
CTCFP49711 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CTCFP49711 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 NHP2-202ENST00000314397 599 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC17.76■□□□□ 0.43
CTCFP49711 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CTCFP49711 BCAS2P2-201ENST00000425064 674 ntBASIC17.76■□□□□ 0.43
CTCFP49711 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC17.76■□□□□ 0.43
CTCFP49711 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC17.76■□□□□ 0.43
CTCFP49711 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC17.76■□□□□ 0.43
CTCFP49711 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC17.76■□□□□ 0.43
CTCFP49711 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 AMT-204ENST00000427987 1646 ntTSL 5 BASIC17.76■□□□□ 0.43
CTCFP49711 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.76■□□□□ 0.43
CTCFP49711 AC092068.3-201ENST00000587894 2016 ntBASIC17.76■□□□□ 0.43
CTCFP49711 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CTCFP49711 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CTCFP49711 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC17.75■□□□□ 0.43
CTCFP49711 MRPL37P1-201ENST00000592451 1337 ntBASIC17.75■□□□□ 0.43
CTCFP49711 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CTCFP49711 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 UROS-201ENST00000368774 744 ntTSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 GAPDHP40-201ENST00000505218 1006 ntBASIC17.75■□□□□ 0.43
CTCFP49711 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 POU5F1P2-201ENST00000521750 823 ntBASIC17.75■□□□□ 0.43
CTCFP49711 NAT9-211ENST00000580632 799 ntTSL 3 BASIC17.75■□□□□ 0.43
CTCFP49711 OR10B1P-201ENST00000601666 907 ntBASIC17.75■□□□□ 0.43
CTCFP49711 AC090164.2-201ENST00000611487 516 ntBASIC17.75■□□□□ 0.43
CTCFP49711 MIR6816-201ENST00000620368 66 ntBASIC17.75■□□□□ 0.43
CTCFP49711 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC17.75■□□□□ 0.43
CTCFP49711 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CTCFP49711 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CTCFP49711 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CTCFP49711 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CTCFP49711 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms