Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SOX3P41225 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SOX3P41225 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.6□□□□□ -0.07
SOX3P41225 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
SOX3P41225 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SOX3P41225 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 AL161772.1-201ENST00000610494 4412 ntBASIC14.59□□□□□ -0.07
SOX3P41225 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
SOX3P41225 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.59□□□□□ -0.07
SOX3P41225 AL353779.1-201ENST00000434793 351 ntBASIC14.59□□□□□ -0.07
SOX3P41225 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.59□□□□□ -0.07
SOX3P41225 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 API5-211ENST00000534695 560 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
SOX3P41225 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 AC091951.1-201ENST00000512854 2465 ntBASIC14.59□□□□□ -0.07
SOX3P41225 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.59□□□□□ -0.07
SOX3P41225 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
SOX3P41225 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
SOX3P41225 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX3P41225 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
SOX3P41225 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.58□□□□□ -0.07
SOX3P41225 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC14.58□□□□□ -0.07
SOX3P41225 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.58□□□□□ -0.07
SOX3P41225 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.58□□□□□ -0.07
SOX3P41225 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.58□□□□□ -0.07
SOX3P41225 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.07
SOX3P41225 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 AC139749.1-202ENST00000617529 3139 ntBASIC14.58□□□□□ -0.08
SOX3P41225 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 AC136604.1-201ENST00000418535 575 ntBASIC14.58□□□□□ -0.08
SOX3P41225 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.58□□□□□ -0.08
SOX3P41225 RPL13P2-201ENST00000440687 659 ntBASIC14.58□□□□□ -0.08
SOX3P41225 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.58□□□□□ -0.08
SOX3P41225 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 AC055876.2-201ENST00000531834 546 ntBASIC14.58□□□□□ -0.08
SOX3P41225 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
SOX3P41225 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
SOX3P41225 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.58□□□□□ -0.08
SOX3P41225 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms