Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC17.71■□□□□ 0.43
SCN4AP35499 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.71■□□□□ 0.43
SCN4AP35499 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC17.71■□□□□ 0.43
SCN4AP35499 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN4AP35499 AC011471.3-201ENST00000623576 402 ntBASIC17.71■□□□□ 0.43
SCN4AP35499 MME-218ENST00000625667 363 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN4AP35499 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.71■□□□□ 0.43
SCN4AP35499 AC092171.3-201ENST00000610122 2651 ntBASIC17.71■□□□□ 0.43
SCN4AP35499 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
SCN4AP35499 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
SCN4AP35499 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC17.71■□□□□ 0.43
SCN4AP35499 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
SCN4AP35499 ZNF436-AS1-201ENST00000335648 2547 ntBASIC17.71■□□□□ 0.42
SCN4AP35499 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SCN4AP35499 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.71■□□□□ 0.42
SCN4AP35499 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
SCN4AP35499 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
SCN4AP35499 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.7■□□□□ 0.42
SCN4AP35499 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SCN4AP35499 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC17.7■□□□□ 0.42
SCN4AP35499 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC17.7■□□□□ 0.42
SCN4AP35499 RNA5SP417-201ENST00000516459 108 ntBASIC17.7■□□□□ 0.42
SCN4AP35499 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC17.7■□□□□ 0.42
SCN4AP35499 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 AP000322.3-201ENST00000608665 388 ntBASIC17.7■□□□□ 0.42
SCN4AP35499 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC17.7■□□□□ 0.42
SCN4AP35499 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.7■□□□□ 0.42
SCN4AP35499 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
SCN4AP35499 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
SCN4AP35499 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC17.7■□□□□ 0.42
SCN4AP35499 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.7■□□□□ 0.42
SCN4AP35499 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC17.7■□□□□ 0.42
SCN4AP35499 AC002044.2-201ENST00000624910 970 ntBASIC17.7■□□□□ 0.42
SCN4AP35499 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.7■□□□□ 0.42
SCN4AP35499 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 AC003102.2-201ENST00000589195 1469 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.69■□□□□ 0.42
SCN4AP35499 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.69■□□□□ 0.42
SCN4AP35499 AC127383.1-201ENST00000444697 1800 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SCN4AP35499 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 AQP7P5-201ENST00000428759 1049 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 AQP7P4-201ENST00000447083 1042 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 AQP7P2-201ENST00000453967 1041 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 AQP7P3-201ENST00000624547 1041 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 AC009145.4-201ENST00000625119 1294 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC17.69■□□□□ 0.42
SCN4AP35499 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.69■□□□□ 0.42
SCN4AP35499 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
SCN4AP35499 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 HLA-DQB1-202ENST00000399079 1501 ntBASIC17.69■□□□□ 0.42
SCN4AP35499 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
SCN4AP35499 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SCN4AP35499 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC17.68■□□□□ 0.42
SCN4AP35499 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
SCN4AP35499 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
SCN4AP35499 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms