Protein–RNA interactions for Protein: P35251

RFC1, Replication factor C subunit 1, humanhuman

Predicted RBP Predictions only

Length 1,148 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1P35251 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 AC027796.2-201ENST00000575326 344 ntBASIC16.32■□□□□ 0.2
RFC1P35251 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC16.32■□□□□ 0.2
RFC1P35251 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 AC025181.2-201ENST00000606994 802 ntBASIC16.32■□□□□ 0.2
RFC1P35251 AC004790.1-201ENST00000612686 536 ntBASIC16.32■□□□□ 0.2
RFC1P35251 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.32■□□□□ 0.2
RFC1P35251 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
RFC1P35251 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 AGAP7P-201ENST00000582299 2062 ntBASIC16.31■□□□□ 0.2
RFC1P35251 AGAP14-201ENST00000624701 2060 ntBASIC16.31■□□□□ 0.2
RFC1P35251 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.31■□□□□ 0.2
RFC1P35251 MEIS3P1-201ENST00000495167 958 ntBASIC16.31■□□□□ 0.2
RFC1P35251 AQP6-203ENST00000551733 849 ntTSL 3 BASIC16.31■□□□□ 0.2
RFC1P35251 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
RFC1P35251 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.31■□□□□ 0.2
RFC1P35251 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
RFC1P35251 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.31■□□□□ 0.2
RFC1P35251 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RFC1P35251 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 FTH1-202ENST00000526640 786 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 AC104794.3-201ENST00000566840 1248 ntBASIC16.3■□□□□ 0.2
RFC1P35251 AC000095.1-201ENST00000603208 874 ntBASIC16.3■□□□□ 0.2
RFC1P35251 AL391069.4-201ENST00000609583 481 ntBASIC16.3■□□□□ 0.2
RFC1P35251 AL158212.4-201ENST00000624062 1286 ntBASIC16.3■□□□□ 0.2
RFC1P35251 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.3■□□□□ 0.2
RFC1P35251 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RFC1P35251 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RFC1P35251 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.29■□□□□ 0.2
RFC1P35251 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC1P35251 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC1P35251 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC1P35251 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC1P35251 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RFC1P35251 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RFC1P35251 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms