Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 AC236430.1-201ENST00000402231 743 ntBASIC15.6■□□□□ 0.09
PTPN4P29074 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.6■□□□□ 0.09
PTPN4P29074 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.6■□□□□ 0.09
PTPN4P29074 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC15.6■□□□□ 0.09
PTPN4P29074 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.6■□□□□ 0.09
PTPN4P29074 CNTNAP3P2-201ENST00000617175 3861 ntBASIC15.6■□□□□ 0.09
PTPN4P29074 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
PTPN4P29074 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
PTPN4P29074 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 C1R-201ENST00000535233 2211 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.59■□□□□ 0.09
PTPN4P29074 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 AC142381.1-201ENST00000426099 345 ntBASIC15.59■□□□□ 0.09
PTPN4P29074 AC002472.2-201ENST00000442739 958 ntBASIC15.59■□□□□ 0.09
PTPN4P29074 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 RN7SL204P-201ENST00000582831 262 ntBASIC15.59■□□□□ 0.09
PTPN4P29074 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 AC239800.4-201ENST00000603712 296 ntBASIC15.59■□□□□ 0.09
PTPN4P29074 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.59■□□□□ 0.09
PTPN4P29074 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC15.59■□□□□ 0.09
PTPN4P29074 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
PTPN4P29074 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
PTPN4P29074 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
PTPN4P29074 AC015656.1-201ENST00000624209 3578 ntBASIC15.59■□□□□ 0.09
PTPN4P29074 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN4P29074 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN4P29074 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
PTPN4P29074 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
PTPN4P29074 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.58■□□□□ 0.09
PTPN4P29074 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.58■□□□□ 0.09
PTPN4P29074 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.09
PTPN4P29074 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
PTPN4P29074 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.58■□□□□ 0.09
PTPN4P29074 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.58■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms