Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SMARCA1P28370 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCA1P28370 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
SMARCA1P28370 AL157414.3-201ENST00000624276 1954 ntBASIC17.59■□□□□ 0.41
SMARCA1P28370 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.59■□□□□ 0.41
SMARCA1P28370 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCA1P28370 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCA1P28370 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 OR8S1-201ENST00000310194 1080 ntBASIC17.59■□□□□ 0.41
SMARCA1P28370 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.59■□□□□ 0.41
SMARCA1P28370 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC17.59■□□□□ 0.41
SMARCA1P28370 C2orf27AP3-201ENST00000434123 579 ntBASIC17.59■□□□□ 0.41
SMARCA1P28370 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
SMARCA1P28370 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.59■□□□□ 0.41
SMARCA1P28370 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SMARCA1P28370 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SMARCA1P28370 AL354718.3-201ENST00000616414 581 ntBASIC17.59■□□□□ 0.41
SMARCA1P28370 CR382287.1-201ENST00000623954 586 ntBASIC17.59■□□□□ 0.41
SMARCA1P28370 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
SMARCA1P28370 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SMARCA1P28370 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.59■□□□□ 0.41
SMARCA1P28370 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.59■□□□□ 0.41
SMARCA1P28370 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.41
SMARCA1P28370 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SMARCA1P28370 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SMARCA1P28370 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.58■□□□□ 0.41
SMARCA1P28370 FOS-202ENST00000535987 1402 ntTSL 2 BASIC17.58■□□□□ 0.41
SMARCA1P28370 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.4
SMARCA1P28370 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 RPL7P3-201ENST00000441388 714 ntBASIC17.58■□□□□ 0.4
SMARCA1P28370 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.58■□□□□ 0.4
SMARCA1P28370 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SMARCA1P28370 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC17.58■□□□□ 0.4
SMARCA1P28370 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.58■□□□□ 0.4
SMARCA1P28370 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.58■□□□□ 0.4
SMARCA1P28370 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
SMARCA1P28370 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC17.57■□□□□ 0.4
SMARCA1P28370 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.57■□□□□ 0.4
SMARCA1P28370 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SMARCA1P28370 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.57■□□□□ 0.4
SMARCA1P28370 AC006001.1-201ENST00000325130 474 ntBASIC17.57■□□□□ 0.4
SMARCA1P28370 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 PGF-202ENST00000405431 666 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.57■□□□□ 0.4
SMARCA1P28370 RNA5SP486-201ENST00000515961 83 ntBASIC17.57■□□□□ 0.4
SMARCA1P28370 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.57■□□□□ 0.4
SMARCA1P28370 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 LARP4-220ENST00000615080 856 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
SMARCA1P28370 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.57■□□□□ 0.4
SMARCA1P28370 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
SMARCA1P28370 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms