Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 AL158070.2-201ENST00000623713 1621 ntBASIC16.24■□□□□ 0.19
BDNFP23560 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
BDNFP23560 CTBP2P5-201ENST00000454986 1264 ntBASIC16.24■□□□□ 0.19
BDNFP23560 AC007551.1-201ENST00000457394 519 ntBASIC16.24■□□□□ 0.19
BDNFP23560 AC104989.1-201ENST00000519711 778 ntBASIC16.24■□□□□ 0.19
BDNFP23560 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 SAMD11P1-201ENST00000571429 661 ntBASIC16.24■□□□□ 0.19
BDNFP23560 GNRHR2-203ENST00000581100 1187 ntBASIC16.24■□□□□ 0.19
BDNFP23560 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
BDNFP23560 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.24■□□□□ 0.19
BDNFP23560 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.24■□□□□ 0.19
BDNFP23560 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 KRT8P35-201ENST00000483942 1338 ntBASIC16.23■□□□□ 0.19
BDNFP23560 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
BDNFP23560 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 KLF2P2-201ENST00000416807 1039 ntBASIC16.23■□□□□ 0.19
BDNFP23560 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 KLF2P4-201ENST00000451959 1225 ntBASIC16.23■□□□□ 0.19
BDNFP23560 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC16.23■□□□□ 0.19
BDNFP23560 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.23■□□□□ 0.19
BDNFP23560 AC244669.2-201ENST00000612320 853 ntBASIC16.23■□□□□ 0.19
BDNFP23560 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 AL596257.1-201ENST00000641463 2694 ntBASIC16.23■□□□□ 0.19
BDNFP23560 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 AC148477.4-201ENST00000613430 1793 ntBASIC16.23■□□□□ 0.19
BDNFP23560 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.23■□□□□ 0.19
BDNFP23560 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
BDNFP23560 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.23■□□□□ 0.19
BDNFP23560 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
BDNFP23560 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms