Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 AC020763.4-201ENST00000623414 4170 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 FGFR3P1-201ENST00000449999 601 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.48□□□□□ -0.09
COL5A1P20908 LY6E-208ENST00000520531 490 ntTSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
COL5A1P20908 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 AC100827.2-201ENST00000563214 1194 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC14.47□□□□□ -0.09
COL5A1P20908 E2F3P2-201ENST00000447755 1422 ntBASIC14.47□□□□□ -0.09
COL5A1P20908 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 RPSAP31-201ENST00000416648 895 ntBASIC14.47□□□□□ -0.09
COL5A1P20908 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 MIR4750-201ENST00000584564 56 ntBASIC14.47□□□□□ -0.09
COL5A1P20908 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
COL5A1P20908 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC14.47□□□□□ -0.09
COL5A1P20908 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
COL5A1P20908 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL5A1P20908 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
COL5A1P20908 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 INE2-201ENST00000630399 1874 ntBASIC14.47□□□□□ -0.09
COL5A1P20908 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.47□□□□□ -0.09
COL5A1P20908 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
COL5A1P20908 AC092127.1-201ENST00000567093 3455 ntBASIC14.46□□□□□ -0.09
COL5A1P20908 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC14.46□□□□□ -0.09
COL5A1P20908 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.46□□□□□ -0.09
COL5A1P20908 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
COL5A1P20908 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.46□□□□□ -0.09
COL5A1P20908 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.46□□□□□ -0.09
COL5A1P20908 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 HNRNPA1P41-201ENST00000397777 928 ntBASIC14.46□□□□□ -0.09
COL5A1P20908 AC104073.2-201ENST00000453737 312 ntBASIC14.46□□□□□ -0.09
COL5A1P20908 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC14.46□□□□□ -0.09
COL5A1P20908 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.46□□□□□ -0.09
COL5A1P20908 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC14.46□□□□□ -0.09
COL5A1P20908 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
COL5A1P20908 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.46□□□□□ -0.09
COL5A1P20908 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC14.46□□□□□ -0.09
COL5A1P20908 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.46□□□□□ -0.09
COL5A1P20908 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.46□□□□□ -0.09
COL5A1P20908 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 AC006058.4-201ENST00000624016 1670 ntBASIC14.46□□□□□ -0.09
COL5A1P20908 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
COL5A1P20908 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms