Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.22■□□□□ 0.03
VPS4BO75351 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.22■□□□□ 0.03
VPS4BO75351 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
VPS4BO75351 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
VPS4BO75351 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS4BO75351 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.21■□□□□ 0.03
VPS4BO75351 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 FGD5P1-202ENST00000614866 2498 ntBASIC15.21■□□□□ 0.03
VPS4BO75351 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
VPS4BO75351 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 AC022144.1-201ENST00000602255 1580 ntBASIC15.21■□□□□ 0.03
VPS4BO75351 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 AC136604.1-201ENST00000418535 575 ntBASIC15.21■□□□□ 0.03
VPS4BO75351 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS4BO75351 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.21■□□□□ 0.03
VPS4BO75351 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.21■□□□□ 0.03
VPS4BO75351 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.21■□□□□ 0.03
VPS4BO75351 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
VPS4BO75351 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
VPS4BO75351 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
VPS4BO75351 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.21■□□□□ 0.03
VPS4BO75351 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.21■□□□□ 0.02
VPS4BO75351 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.21■□□□□ 0.02
VPS4BO75351 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.02
VPS4BO75351 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
VPS4BO75351 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.21■□□□□ 0.02
VPS4BO75351 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
VPS4BO75351 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.21■□□□□ 0.02
VPS4BO75351 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
VPS4BO75351 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.2■□□□□ 0.02
VPS4BO75351 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.2■□□□□ 0.02
VPS4BO75351 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS4BO75351 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
VPS4BO75351 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 AC100757.3-201ENST00000622361 1406 ntBASIC15.2■□□□□ 0.02
VPS4BO75351 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 MAX-210ENST00000555419 765 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 AP000842.3-202ENST00000569238 1080 ntBASIC15.2■□□□□ 0.02
VPS4BO75351 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.2■□□□□ 0.02
VPS4BO75351 IFT20-216ENST00000588477 774 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 AL590560.3-201ENST00000623350 461 ntBASIC15.2■□□□□ 0.02
VPS4BO75351 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS4BO75351 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.2■□□□□ 0.02
VPS4BO75351 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
VPS4BO75351 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC15.2■□□□□ 0.02
VPS4BO75351 AC106881.1-201ENST00000605849 3329 ntBASIC15.2■□□□□ 0.02
VPS4BO75351 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
VPS4BO75351 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VPS4BO75351 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms