Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 AC006453.4-201ENST00000636949 1252 ntBASIC19.46■□□□□ 0.71
NPHP1O15259 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP1O15259 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 POLL-217ENST00000628479 1953 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP1O15259 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC19.46■□□□□ 0.71
NPHP1O15259 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
NPHP1O15259 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.46■□□□□ 0.71
NPHP1O15259 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
NPHP1O15259 AC015818.8-201ENST00000587907 1519 ntBASIC19.46■□□□□ 0.71
NPHP1O15259 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.7
NPHP1O15259 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
NPHP1O15259 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
NPHP1O15259 PCDHA14-201ENST00000506751 2298 ntBASIC19.45■□□□□ 0.7
NPHP1O15259 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 FLJ38576-201ENST00000623820 2459 ntBASIC19.45■□□□□ 0.7
NPHP1O15259 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
NPHP1O15259 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
NPHP1O15259 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
NPHP1O15259 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC19.45■□□□□ 0.7
NPHP1O15259 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC19.45■□□□□ 0.7
NPHP1O15259 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 FNTAP2-201ENST00000430308 634 ntBASIC19.45■□□□□ 0.7
NPHP1O15259 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 AKR7A2P1-201ENST00000460134 915 ntBASIC19.45■□□□□ 0.7
NPHP1O15259 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC19.45■□□□□ 0.7
NPHP1O15259 AP006547.1-201ENST00000563435 692 ntBASIC19.45■□□□□ 0.7
NPHP1O15259 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.45■□□□□ 0.7
NPHP1O15259 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
NPHP1O15259 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC19.45■□□□□ 0.7
NPHP1O15259 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
NPHP1O15259 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC19.45■□□□□ 0.7
NPHP1O15259 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
NPHP1O15259 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
NPHP1O15259 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
NPHP1O15259 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
NPHP1O15259 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
NPHP1O15259 MIR648-201ENST00000385046 94 ntBASIC19.44■□□□□ 0.7
NPHP1O15259 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.44■□□□□ 0.7
NPHP1O15259 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC19.44■□□□□ 0.7
NPHP1O15259 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC19.44■□□□□ 0.7
NPHP1O15259 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC19.44■□□□□ 0.7
NPHP1O15259 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC19.44■□□□□ 0.7
NPHP1O15259 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC19.44■□□□□ 0.7
NPHP1O15259 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
NPHP1O15259 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC19.44■□□□□ 0.7
NPHP1O15259 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC19.44■□□□□ 0.7
NPHP1O15259 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.44■□□□□ 0.7
NPHP1O15259 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 LRRC59-203ENST00000576448 1531 ntBASIC19.44■□□□□ 0.7
NPHP1O15259 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC19.44■□□□□ 0.7
NPHP1O15259 AL596257.1-201ENST00000641463 2694 ntBASIC19.44■□□□□ 0.7
NPHP1O15259 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NPHP1O15259 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC19.44■□□□□ 0.7
NPHP1O15259 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
NPHP1O15259 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC19.43■□□□□ 0.7
NPHP1O15259 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NPHP1O15259 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC19.43■□□□□ 0.7
NPHP1O15259 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NPHP1O15259 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
NPHP1O15259 ELK2AP-201ENST00000392510 1007 ntBASIC19.43■□□□□ 0.7
NPHP1O15259 HNRNPA1P32-201ENST00000396326 963 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms