Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 AP3M2-201ENST00000174653 3661 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
PDLIM1O00151 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC14.81□□□□□ -0.04
PDLIM1O00151 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.81□□□□□ -0.04
PDLIM1O00151 HMGA1P7-201ENST00000406908 502 ntBASIC14.81□□□□□ -0.04
PDLIM1O00151 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 DNAJB3-201ENST00000446806 729 ntBASIC14.81□□□□□ -0.04
PDLIM1O00151 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
PDLIM1O00151 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 KARS-201ENST00000302445 2005 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
PDLIM1O00151 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
PDLIM1O00151 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.81□□□□□ -0.04
PDLIM1O00151 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PDLIM1O00151 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PDLIM1O00151 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 GPX1P2-201ENST00000429271 606 ntBASIC14.8□□□□□ -0.04
PDLIM1O00151 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.8□□□□□ -0.04
PDLIM1O00151 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC14.8□□□□□ -0.04
PDLIM1O00151 THTPA-204ENST00000554970 569 ntTSL 4 BASIC14.8□□□□□ -0.04
PDLIM1O00151 THTPA-206ENST00000556015 535 ntTSL 3 BASIC14.8□□□□□ -0.04
PDLIM1O00151 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 MIR4313-201ENST00000580760 101 ntBASIC14.8□□□□□ -0.04
PDLIM1O00151 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 AL031055.1-201ENST00000606362 631 ntBASIC14.8□□□□□ -0.04
PDLIM1O00151 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.8□□□□□ -0.04
PDLIM1O00151 GNG12-AS1-201ENST00000413628 2058 ntTSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.8□□□□□ -0.04
PDLIM1O00151 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PDLIM1O00151 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.8□□□□□ -0.04
PDLIM1O00151 SBF1P1-201ENST00000444527 5631 ntBASIC14.79□□□□□ -0.04
PDLIM1O00151 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PDLIM1O00151 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PDLIM1O00151 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PDLIM1O00151 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PDLIM1O00151 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC14.79□□□□□ -0.04
PDLIM1O00151 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
PDLIM1O00151 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PDLIM1O00151 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.79□□□□□ -0.04
PDLIM1O00151 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PDLIM1O00151 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms