Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 AL391280.1-201ENST00000506969 1062 ntBASIC17.3■□□□□ 0.36
COL20A1Q9P218 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 AC073413.1-201ENST00000603927 732 ntBASIC17.3■□□□□ 0.36
COL20A1Q9P218 AC091271.1-201ENST00000611877 1162 ntBASIC17.3■□□□□ 0.36
COL20A1Q9P218 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL20A1Q9P218 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL20A1Q9P218 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AL137783.1-201ENST00000623494 1896 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 PES1-204ENST00000402284 2144 ntTSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AC007969.1-201ENST00000433675 447 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 Z93015.1-201ENST00000451718 390 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 FAM8A2P-201ENST00000528813 1142 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 EMC4-209ENST00000559421 497 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 OR10B1P-201ENST00000601666 907 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 AC005695.3-201ENST00000614522 232 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 MIR6787-201ENST00000616675 61 ntBASIC17.29■□□□□ 0.36
COL20A1Q9P218 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.29■□□□□ 0.36
COL20A1Q9P218 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL20A1Q9P218 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 AL023775.1-201ENST00000454907 1746 ntBASIC17.28■□□□□ 0.36
COL20A1Q9P218 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 FAM8A4P-201ENST00000435433 1213 ntBASIC17.28■□□□□ 0.36
COL20A1Q9P218 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 AL591846.1-201ENST00000451736 433 ntBASIC17.28■□□□□ 0.36
COL20A1Q9P218 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL20A1Q9P218 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
COL20A1Q9P218 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms