Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AL353732.1-201ENST00000569618 1459 ntBASIC13.75□□□□□ -0.21
MMP28Q9H239 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 AC011477.6-201ENST00000604980 1927 ntBASIC13.75□□□□□ -0.21
MMP28Q9H239 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC13.75□□□□□ -0.21
MMP28Q9H239 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 CRYGEP-201ENST00000412192 528 ntBASIC13.75□□□□□ -0.21
MMP28Q9H239 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC13.75□□□□□ -0.21
MMP28Q9H239 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AC145285.3-201ENST00000564603 959 ntBASIC13.75□□□□□ -0.21
MMP28Q9H239 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 Z83851.2-201ENST00000609564 659 ntBASIC13.75□□□□□ -0.21
MMP28Q9H239 BSG-214ENST00000614867 960 ntTSL 3 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AC092135.3-201ENST00000624151 1846 ntBASIC13.75□□□□□ -0.21
MMP28Q9H239 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC13.75□□□□□ -0.21
MMP28Q9H239 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC13.75□□□□□ -0.21
MMP28Q9H239 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
MMP28Q9H239 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
MMP28Q9H239 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
MMP28Q9H239 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 CARHSP1-216ENST00000610831 2841 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
MMP28Q9H239 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 MED15P5-201ENST00000423150 992 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 WDR53-204ENST00000433160 887 ntTSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 VN2R19P-201ENST00000442399 1052 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.74□□□□□ -0.21
MMP28Q9H239 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC13.74□□□□□ -0.21
MMP28Q9H239 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 OR7E47P-204ENST00000575924 449 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 CYB561-216ENST00000582297 897 ntTSL 3 BASIC13.74□□□□□ -0.21
MMP28Q9H239 AC140113.2-201ENST00000604370 208 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 AC027601.4-201ENST00000611259 610 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC13.74□□□□□ -0.21
MMP28Q9H239 AP001350.2-201ENST00000625104 1094 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC13.74□□□□□ -0.21
MMP28Q9H239 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.74□□□□□ -0.21
MMP28Q9H239 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MMP28Q9H239 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms