Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
USB1Q9BQ65 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USB1Q9BQ65 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
USB1Q9BQ65 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.99□□□□□ -0.17
USB1Q9BQ65 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USB1Q9BQ65 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
USB1Q9BQ65 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
USB1Q9BQ65 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USB1Q9BQ65 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
USB1Q9BQ65 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
USB1Q9BQ65 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 C22orf34-204ENST00000414287 2197 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AL365209.1-201ENST00000624418 6473 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC098614.1-201ENST00000368528 745 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 MIR661-201ENST00000384842 89 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC015922.1-201ENST00000421102 1152 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 SETP12-201ENST00000514068 805 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC055876.2-201ENST00000531834 546 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC044860.1-202ENST00000559481 777 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC090515.5-201ENST00000560378 526 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC015849.4-201ENST00000603678 421 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AL662799.1-202ENST00000614205 422 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AF228730.6-201ENST00000641497 218 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC084121.3-201ENST00000641716 218 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AC105233.6-201ENST00000642093 218 ntBASIC13.98□□□□□ -0.17
USB1Q9BQ65 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
USB1Q9BQ65 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
USB1Q9BQ65 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 Z97205.2-201ENST00000564697 1639 ntBASIC13.97□□□□□ -0.17
USB1Q9BQ65 AP002414.2-201ENST00000591780 3365 ntBASIC13.97□□□□□ -0.17
USB1Q9BQ65 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 MTHFR-217ENST00000641820 1569 ntBASIC13.97□□□□□ -0.17
USB1Q9BQ65 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.97□□□□□ -0.17
USB1Q9BQ65 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
USB1Q9BQ65 AC013470.3-201ENST00000420252 1194 ntBASIC13.97□□□□□ -0.17
USB1Q9BQ65 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.97□□□□□ -0.17
USB1Q9BQ65 AC022148.2-201ENST00000586176 560 ntBASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms