Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 RPL37AP1-201ENST00000412502 279 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 BX842568.4-201ENST00000421222 227 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 MIR3687-2-201ENST00000577708 61 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 AC025048.3-201ENST00000590609 569 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 MIR3687-1-201ENST00000614492 61 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 AC005702.4-201ENST00000618393 416 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 AP001059.3-201ENST00000619053 235 ntBASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.06■□□□□ 0.16
ATG4AQ8WYN0 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 Z97205.2-201ENST00000564697 1639 ntBASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 CETN4P-206ENST00000642099 2168 ntBASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 UPF3AP3-201ENST00000420996 769 ntBASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 LINC01115-203ENST00000606068 577 ntBASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 MTHFR-210ENST00000641407 2387 ntBASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
ATG4AQ8WYN0 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
ATG4AQ8WYN0 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms