Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
LMX1AQ8TE12 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
LMX1AQ8TE12 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15□□□□□ -0.01
LMX1AQ8TE12 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 HOMER2P2-201ENST00000451621 847 ntBASIC14.99□□□□□ -0.01
LMX1AQ8TE12 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 SNX12-206ENST00000622259 661 ntTSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.99□□□□□ -0.01
LMX1AQ8TE12 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AC084018.2-201ENST00000613093 2607 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AL645937.2-201ENST00000396808 931 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 MIR1247-201ENST00000408206 136 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 CD8B2-202ENST00000417670 633 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 BCYRN1-201ENST00000418539 200 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AC104306.2-201ENST00000451877 341 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 SAMD11P1-201ENST00000571429 661 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 MIR3615-201ENST00000581999 87 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 CICP13-201ENST00000422015 2789 ntBASIC14.98□□□□□ -0.01
LMX1AQ8TE12 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LMX1AQ8TE12 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 67.7 ms