Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
VPS52Q8N1B4 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 TK2-221ENST00000620035 5060 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 MIR1908-201ENST00000410394 80 ntBASIC16.82■□□□□ 0.28
VPS52Q8N1B4 RPL7P3-201ENST00000441388 714 ntBASIC16.82■□□□□ 0.28
VPS52Q8N1B4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.82■□□□□ 0.28
VPS52Q8N1B4 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VPS52Q8N1B4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AC010491.1-201ENST00000563101 2797 ntBASIC16.81■□□□□ 0.28
VPS52Q8N1B4 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AC136604.1-201ENST00000418535 575 ntBASIC16.81■□□□□ 0.28
VPS52Q8N1B4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 FO681548.1-201ENST00000455617 1132 ntBASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AC007551.1-201ENST00000457394 519 ntBASIC16.81■□□□□ 0.28
VPS52Q8N1B4 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AC009486.1-201ENST00000569860 813 ntBASIC16.81■□□□□ 0.28
VPS52Q8N1B4 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 CLUHP6-201ENST00000580789 941 ntBASIC16.81■□□□□ 0.28
VPS52Q8N1B4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
VPS52Q8N1B4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms