Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 API5-202ENST00000420461 2009 ntTSL 2 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 TMBIM7P-203ENST00000641617 1718 ntBASIC13.74□□□□□ -0.21
SKA3Q8IX90 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 RAC2-204ENST00000406508 893 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AL589987.1-201ENST00000453380 819 ntBASIC13.74□□□□□ -0.21
SKA3Q8IX90 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AC092337.1-201ENST00000568699 1129 ntBASIC13.74□□□□□ -0.21
SKA3Q8IX90 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 AFF3-202ENST00000409236 9849 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.74□□□□□ -0.21
SKA3Q8IX90 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
SKA3Q8IX90 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 AL122018.1-201ENST00000446607 2310 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC073347.1-201ENST00000421633 2643 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SKA3Q8IX90 MEIS3P1-201ENST00000495167 958 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC13.73□□□□□ -0.21
SKA3Q8IX90 SPCS2P1-201ENST00000561636 679 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC104794.3-201ENST00000566840 1248 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 AC011467.4-201ENST00000594891 528 ntBASIC13.73□□□□□ -0.21
SKA3Q8IX90 RNA5-8SN1-201ENST00000610460 153 ntBASIC13.73□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms