Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 NAP1L6-202ENST00000641404 1222 ntBASIC12.57□□□□□ -0.4
VPS13CQ709C8 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC12.57□□□□□ -0.4
VPS13CQ709C8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
VPS13CQ709C8 AC007292.2-201ENST00000593524 1812 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 LSM5-207ENST00000410044 687 ntTSL 3 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AL022344.2-201ENST00000568976 968 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AP000593.2-201ENST00000542775 1433 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 PIN4P1-201ENST00000451079 396 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 SH3BGR-209ENST00000458295 812 ntTSL 3 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 LINC00554-201ENST00000564841 3011 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 HPGD-203ENST00000422112 805 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 EHF-205ENST00000527935 557 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AL118516.1-201ENST00000564152 670 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 AC006158.1-201ENST00000610661 249 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AC025271.4-201ENST00000621477 1726 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AL157791.1-201ENST00000553667 1699 ntBASIC12.56□□□□□ -0.4
VPS13CQ709C8 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
VPS13CQ709C8 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.56□□□□□ -0.4
VPS13CQ709C8 AL008718.2-201ENST00000609206 1313 ntBASIC12.55□□□□□ -0.4
VPS13CQ709C8 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 AL357563.1-201ENST00000404728 395 ntBASIC12.55□□□□□ -0.4
VPS13CQ709C8 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 AL132994.2-201ENST00000603120 687 ntBASIC12.55□□□□□ -0.4
VPS13CQ709C8 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 NOC2LP1-201ENST00000450578 752 ntBASIC12.55□□□□□ -0.4
VPS13CQ709C8 AGPAT5P1-201ENST00000455855 1019 ntBASIC12.55□□□□□ -0.4
VPS13CQ709C8 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 KRT8P29-201ENST00000420409 1371 ntBASIC12.55□□□□□ -0.4
VPS13CQ709C8 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
VPS13CQ709C8 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
VPS13CQ709C8 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70.2 ms