Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CCDC88AQ3V6T2 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 PGAM1P5-201ENST00000548011 764 ntBASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CCDC88AQ3V6T2 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 NME2-201ENST00000393183 568 ntTSL 2 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 HNRNPA1P41-201ENST00000397777 928 ntBASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 DUX4L47-201ENST00000566374 394 ntBASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 AC242376.2-201ENST00000619355 883 ntBASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 AC004923.1-202ENST00000642106 209 ntBASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.52■□□□□ 0.55
CCDC88AQ3V6T2 CYP51A1P3-201ENST00000400072 1428 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 TNRC18P3-201ENST00000441896 2691 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 KRT8P29-201ENST00000420409 1371 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 AP000356.3-201ENST00000382243 753 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 AC026803.1-201ENST00000569130 274 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 AC007881.3-201ENST00000608897 607 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 REXO1L4P-201ENST00000605109 1937 ntBASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
CCDC88AQ3V6T2 DOC2GP-204ENST00000639052 2548 ntBASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 RBM38-204ENST00000371219 760 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 TMCO5B-205ENST00000530020 894 ntBASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCDC88AQ3V6T2 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms