Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 C18orf15-201ENST00000623680 2534 ntBASIC18.8■□□□□ 0.6
NUP98P52948 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
NUP98P52948 TMBIM7P-203ENST00000641617 1718 ntBASIC18.8■□□□□ 0.6
NUP98P52948 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 BAIAP2-201ENST00000321280 1939 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 AC234782.1-201ENST00000451950 919 ntBASIC18.8■□□□□ 0.6
NUP98P52948 CEP164P1-201ENST00000455142 418 ntBASIC18.8■□□□□ 0.6
NUP98P52948 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC18.8■□□□□ 0.6
NUP98P52948 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.8■□□□□ 0.6
NUP98P52948 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
NUP98P52948 YRDCP1-201ENST00000621419 643 ntBASIC18.8■□□□□ 0.6
NUP98P52948 AC004923.1-202ENST00000642106 209 ntBASIC18.8■□□□□ 0.6
NUP98P52948 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NUP98P52948 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NUP98P52948 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP98P52948 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 MROH4P-201ENST00000431302 1578 ntBASIC18.79■□□□□ 0.6
NUP98P52948 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
NUP98P52948 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP98P52948 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP98P52948 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP98P52948 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC18.79■□□□□ 0.6
NUP98P52948 AC012618.1-201ENST00000461223 412 ntBASIC18.79■□□□□ 0.6
NUP98P52948 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.79■□□□□ 0.6
NUP98P52948 SUPT4H1P2-201ENST00000501248 353 ntBASIC18.79■□□□□ 0.6
NUP98P52948 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC18.79■□□□□ 0.6
NUP98P52948 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP98P52948 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC18.79■□□□□ 0.6
NUP98P52948 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.79■□□□□ 0.6
NUP98P52948 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP98P52948 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP98P52948 AMT-204ENST00000427987 1646 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP98P52948 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP98P52948 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP98P52948 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
NUP98P52948 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC18.78■□□□□ 0.6
NUP98P52948 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC18.78■□□□□ 0.6
NUP98P52948 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 AC126365.1-201ENST00000578585 1514 ntBASIC18.78■□□□□ 0.6
NUP98P52948 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP98P52948 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP98P52948 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms