Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC14.62□□□□□ -0.07
SOX3P41225 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.62□□□□□ -0.07
SOX3P41225 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
SOX3P41225 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.61□□□□□ -0.07
SOX3P41225 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.61□□□□□ -0.07
SOX3P41225 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.61□□□□□ -0.07
SOX3P41225 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 TCAF2P1-201ENST00000291129 2421 ntBASIC14.61□□□□□ -0.07
SOX3P41225 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.61□□□□□ -0.07
SOX3P41225 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.61□□□□□ -0.07
SOX3P41225 CD81-207ENST00000481687 890 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 AC093004.1-201ENST00000508850 424 ntBASIC14.61□□□□□ -0.07
SOX3P41225 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 AC092337.1-201ENST00000568699 1129 ntBASIC14.61□□□□□ -0.07
SOX3P41225 AL662799.1-202ENST00000614205 422 ntBASIC14.61□□□□□ -0.07
SOX3P41225 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.61□□□□□ -0.07
SOX3P41225 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.61□□□□□ -0.07
SOX3P41225 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 AC087481.3-201ENST00000602886 1894 ntBASIC14.61□□□□□ -0.07
SOX3P41225 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.61□□□□□ -0.07
SOX3P41225 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
SOX3P41225 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 AC011477.6-201ENST00000604980 1927 ntBASIC14.6□□□□□ -0.07
SOX3P41225 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
SOX3P41225 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 AC074338.1-201ENST00000416825 156 ntBASIC14.6□□□□□ -0.07
SOX3P41225 DFFBP1-201ENST00000433250 979 ntBASIC14.6□□□□□ -0.07
SOX3P41225 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC14.6□□□□□ -0.07
SOX3P41225 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.6□□□□□ -0.07
SOX3P41225 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.6□□□□□ -0.07
SOX3P41225 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
SOX3P41225 HNRNPUP1-201ENST00000554987 333 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.6□□□□□ -0.07
SOX3P41225 AC023310.3-201ENST00000557027 670 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AC100756.1-201ENST00000562736 682 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AC138749.3-201ENST00000567691 622 ntBASIC14.6□□□□□ -0.07
SOX3P41225 SPDYE22P-201ENST00000582158 798 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AC116165.1-201ENST00000611806 668 ntBASIC14.6□□□□□ -0.07
SOX3P41225 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AF228730.6-201ENST00000641497 218 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AC084121.3-201ENST00000641716 218 ntBASIC14.6□□□□□ -0.07
SOX3P41225 AC105233.6-201ENST00000642093 218 ntBASIC14.6□□□□□ -0.07
SOX3P41225 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
SOX3P41225 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms