Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BDNFP23560 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BDNFP23560 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.19
BDNFP23560 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
BDNFP23560 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BDNFP23560 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
BDNFP23560 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BDNFP23560 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
BDNFP23560 AC087481.3-201ENST00000602886 1894 ntBASIC16.27■□□□□ 0.19
BDNFP23560 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
BDNFP23560 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 AC007787.1-201ENST00000588095 1583 ntBASIC16.26■□□□□ 0.19
BDNFP23560 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 AC093525.8-201ENST00000624099 1342 ntBASIC16.26■□□□□ 0.19
BDNFP23560 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 ANKRD19P-201ENST00000338192 862 ntBASIC16.26■□□□□ 0.19
BDNFP23560 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 FTH1P14-201ENST00000482930 551 ntBASIC16.26■□□□□ 0.19
BDNFP23560 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.26■□□□□ 0.19
BDNFP23560 MIR4259-201ENST00000584466 101 ntBASIC16.26■□□□□ 0.19
BDNFP23560 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.26■□□□□ 0.19
BDNFP23560 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.26■□□□□ 0.19
BDNFP23560 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.26■□□□□ 0.19
BDNFP23560 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
BDNFP23560 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC16.26■□□□□ 0.19
BDNFP23560 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
BDNFP23560 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.26■□□□□ 0.19
BDNFP23560 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.25■□□□□ 0.19
BDNFP23560 AC136621.1-201ENST00000624017 2304 ntBASIC16.25■□□□□ 0.19
BDNFP23560 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.25■□□□□ 0.19
BDNFP23560 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 RNU1-114P-201ENST00000365297 166 ntBASIC16.25■□□□□ 0.19
BDNFP23560 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.25■□□□□ 0.19
BDNFP23560 BOLA2P3-201ENST00000404566 256 ntBASIC16.25■□□□□ 0.19
BDNFP23560 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.25■□□□□ 0.19
BDNFP23560 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.25■□□□□ 0.19
BDNFP23560 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.25■□□□□ 0.19
BDNFP23560 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.25■□□□□ 0.19
BDNFP23560 AC119751.2-201ENST00000504529 210 ntBASIC16.25■□□□□ 0.19
BDNFP23560 KRT18P25-201ENST00000508931 1278 ntBASIC16.25■□□□□ 0.19
BDNFP23560 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.25■□□□□ 0.19
BDNFP23560 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.25■□□□□ 0.19
BDNFP23560 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.25■□□□□ 0.19
BDNFP23560 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 PFAS-212ENST00000625942 396 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 AL645728.2-202ENST00000641679 227 ntBASIC16.25■□□□□ 0.19
BDNFP23560 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC16.25■□□□□ 0.19
BDNFP23560 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.25■□□□□ 0.19
BDNFP23560 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.25■□□□□ 0.19
BDNFP23560 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
BDNFP23560 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
BDNFP23560 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
BDNFP23560 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
BDNFP23560 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms