Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC13.17□□□□□ -0.3
USF1P22415 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC13.17□□□□□ -0.3
USF1P22415 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 FAM8A2P-201ENST00000528813 1142 ntBASIC13.17□□□□□ -0.3
USF1P22415 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 NOP2-211ENST00000540228 668 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.17□□□□□ -0.3
USF1P22415 MIR4525-201ENST00000580000 75 ntBASIC13.17□□□□□ -0.3
USF1P22415 RN7SL219P-201ENST00000582872 296 ntBASIC13.17□□□□□ -0.3
USF1P22415 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 RPSAP52-203ENST00000622976 1023 ntBASIC13.17□□□□□ -0.3
USF1P22415 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC13.17□□□□□ -0.3
USF1P22415 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
USF1P22415 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
USF1P22415 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.17□□□□□ -0.3
USF1P22415 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
USF1P22415 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 BCRP2-202ENST00000447763 634 ntBASIC13.16□□□□□ -0.3
USF1P22415 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC13.16□□□□□ -0.3
USF1P22415 BCRP6-201ENST00000510112 632 ntBASIC13.16□□□□□ -0.3
USF1P22415 BCRP7-201ENST00000511549 544 ntBASIC13.16□□□□□ -0.3
USF1P22415 SLED1-202ENST00000512051 380 ntBASIC13.16□□□□□ -0.3
USF1P22415 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC13.16□□□□□ -0.3
USF1P22415 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC13.16□□□□□ -0.3
USF1P22415 AC009486.1-201ENST00000569860 813 ntBASIC13.16□□□□□ -0.3
USF1P22415 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC13.16□□□□□ -0.3
USF1P22415 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.16□□□□□ -0.3
USF1P22415 INTS4P2-202ENST00000614726 2019 ntBASIC13.16□□□□□ -0.3
USF1P22415 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.16□□□□□ -0.3
USF1P22415 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
USF1P22415 AP001282.1-201ENST00000531301 1499 ntBASIC13.16□□□□□ -0.3
USF1P22415 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
USF1P22415 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC13.15□□□□□ -0.3
USF1P22415 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC13.15□□□□□ -0.3
USF1P22415 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.15□□□□□ -0.3
USF1P22415 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC13.15□□□□□ -0.3
USF1P22415 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC13.15□□□□□ -0.3
USF1P22415 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
USF1P22415 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
USF1P22415 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
USF1P22415 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
USF1P22415 AC005229.1-201ENST00000392885 409 ntBASIC13.15□□□□□ -0.3
USF1P22415 AC074338.1-201ENST00000416825 156 ntBASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms