Protein–RNA interactions for Protein: P11441

UBL4A, Ubiquitin-like protein 4A, humanhuman

Predictions only

Length 157 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBL4AP11441 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
UBL4AP11441 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
UBL4AP11441 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
UBL4AP11441 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
UBL4AP11441 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.4□□□□□ -0.1
UBL4AP11441 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
UBL4AP11441 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
UBL4AP11441 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC14.4□□□□□ -0.1
UBL4AP11441 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
UBL4AP11441 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
UBL4AP11441 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.4□□□□□ -0.1
UBL4AP11441 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.4□□□□□ -0.11
UBL4AP11441 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.4□□□□□ -0.11
UBL4AP11441 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
UBL4AP11441 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.39□□□□□ -0.11
UBL4AP11441 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.39□□□□□ -0.11
UBL4AP11441 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.39□□□□□ -0.11
UBL4AP11441 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.39□□□□□ -0.11
UBL4AP11441 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 AL844908.2-201ENST00000609461 460 ntBASIC14.39□□□□□ -0.11
UBL4AP11441 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 AL590560.3-201ENST00000623350 461 ntBASIC14.39□□□□□ -0.11
UBL4AP11441 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
UBL4AP11441 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 AC005089.1-201ENST00000619486 2241 ntBASIC14.39□□□□□ -0.11
UBL4AP11441 MIR600HG-201ENST00000449175 5984 ntBASIC14.39□□□□□ -0.11
UBL4AP11441 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.39□□□□□ -0.11
UBL4AP11441 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
UBL4AP11441 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
UBL4AP11441 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.38□□□□□ -0.11
UBL4AP11441 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
UBL4AP11441 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.38□□□□□ -0.11
UBL4AP11441 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.38□□□□□ -0.11
UBL4AP11441 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.38□□□□□ -0.11
UBL4AP11441 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.38□□□□□ -0.11
UBL4AP11441 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
UBL4AP11441 AC005840.4-201ENST00000541242 2494 ntBASIC14.38□□□□□ -0.11
UBL4AP11441 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC14.38□□□□□ -0.11
UBL4AP11441 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.38□□□□□ -0.11
UBL4AP11441 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
UBL4AP11441 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
UBL4AP11441 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
UBL4AP11441 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.38□□□□□ -0.11
UBL4AP11441 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.38□□□□□ -0.11
UBL4AP11441 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.38□□□□□ -0.11
UBL4AP11441 PMS2P2-201ENST00000425039 1128 ntBASIC14.38□□□□□ -0.11
UBL4AP11441 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.38□□□□□ -0.11
UBL4AP11441 AC055876.3-201ENST00000431496 288 ntBASIC14.38□□□□□ -0.11
UBL4AP11441 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms