Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RB1P06400 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.19■□□□□ 0.18
RB1P06400 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 AL157791.1-201ENST00000553667 1699 ntBASIC16.19■□□□□ 0.18
RB1P06400 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 ACTG1P2-201ENST00000415776 1125 ntBASIC16.19■□□□□ 0.18
RB1P06400 ACTG1P11-201ENST00000425411 1125 ntBASIC16.19■□□□□ 0.18
RB1P06400 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.19■□□□□ 0.18
RB1P06400 PUDPP3-201ENST00000445368 636 ntBASIC16.19■□□□□ 0.18
RB1P06400 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC16.19■□□□□ 0.18
RB1P06400 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 DUX4L47-201ENST00000566374 394 ntBASIC16.19■□□□□ 0.18
RB1P06400 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC16.19■□□□□ 0.18
RB1P06400 AL353770.1-201ENST00000614915 403 ntBASIC16.19■□□□□ 0.18
RB1P06400 AC068587.8-201ENST00000641239 219 ntBASIC16.19■□□□□ 0.18
RB1P06400 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.19■□□□□ 0.18
RB1P06400 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.19■□□□□ 0.18
RB1P06400 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RB1P06400 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 AC084018.2-201ENST00000613093 2607 ntBASIC16.18■□□□□ 0.18
RB1P06400 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RB1P06400 UFM1-202ENST00000379649 846 ntTSL 4 BASIC16.18■□□□□ 0.18
RB1P06400 AC125604.1-201ENST00000496255 707 ntBASIC16.18■□□□□ 0.18
RB1P06400 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.18■□□□□ 0.18
RB1P06400 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC16.18■□□□□ 0.18
RB1P06400 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.18■□□□□ 0.18
RB1P06400 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
RB1P06400 AL162426.1-201ENST00000624141 743 ntBASIC16.18■□□□□ 0.18
RB1P06400 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
RB1P06400 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.18■□□□□ 0.18
RB1P06400 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 AP000593.2-201ENST00000542775 1433 ntBASIC16.18■□□□□ 0.18
RB1P06400 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 AC055811.4-201ENST00000624039 1754 ntBASIC16.18■□□□□ 0.18
RB1P06400 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RB1P06400 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RB1P06400 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.17■□□□□ 0.18
RB1P06400 AC069224.1-201ENST00000566372 1715 ntBASIC16.17■□□□□ 0.18
RB1P06400 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RB1P06400 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.17■□□□□ 0.18
RB1P06400 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.17■□□□□ 0.18
RB1P06400 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
RB1P06400 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.17■□□□□ 0.18
RB1P06400 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC16.17■□□□□ 0.18
RB1P06400 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC16.17■□□□□ 0.18
RB1P06400 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC16.17■□□□□ 0.18
RB1P06400 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.17■□□□□ 0.18
RB1P06400 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RB1P06400 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC16.17■□□□□ 0.18
RB1P06400 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms