Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
SIX3O95343 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
SIX3O95343 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.16■□□□□ 0.02
SIX3O95343 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 USP35-204ENST00000530267 2419 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SIX3O95343 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 CICP14-201ENST00000629111 2732 ntBASIC15.15■□□□□ 0.02
SIX3O95343 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
SIX3O95343 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
SIX3O95343 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 TSEN15P1-201ENST00000423257 515 ntBASIC15.15■□□□□ 0.02
SIX3O95343 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 HLA-V-204ENST00000476601 1289 ntBASIC15.15■□□□□ 0.02
SIX3O95343 SLBP-205ENST00000488267 987 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 AC010336.2-201ENST00000564226 506 ntBASIC15.15■□□□□ 0.02
SIX3O95343 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
SIX3O95343 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 AC139749.1-202ENST00000617529 3139 ntBASIC15.15■□□□□ 0.02
SIX3O95343 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 AC232323.1-201ENST00000540724 2099 ntBASIC15.15■□□□□ 0.02
SIX3O95343 REXO1L5P-201ENST00000622260 2098 ntBASIC15.15■□□□□ 0.02
SIX3O95343 AC007292.2-201ENST00000593524 1812 ntBASIC15.15■□□□□ 0.02
SIX3O95343 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.15■□□□□ 0.02
SIX3O95343 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
SIX3O95343 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.15■□□□□ 0.02
SIX3O95343 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.14■□□□□ 0.01
SIX3O95343 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
SIX3O95343 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC15.14■□□□□ 0.01
SIX3O95343 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 AC026748.1-201ENST00000624349 3251 ntBASIC15.14■□□□□ 0.01
SIX3O95343 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
SIX3O95343 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.14■□□□□ 0.01
SIX3O95343 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.14■□□□□ 0.01
SIX3O95343 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 AC015922.1-201ENST00000421102 1152 ntBASIC15.14■□□□□ 0.01
SIX3O95343 GHSR-202ENST00000427970 912 ntBASIC15.14■□□□□ 0.01
SIX3O95343 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.14■□□□□ 0.01
SIX3O95343 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC15.14■□□□□ 0.01
SIX3O95343 AC051619.7-201ENST00000568314 623 ntBASIC15.14■□□□□ 0.01
SIX3O95343 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.14■□□□□ 0.01
SIX3O95343 AL109936.8-201ENST00000641772 604 ntBASIC15.14■□□□□ 0.01
SIX3O95343 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.14■□□□□ 0.01
SIX3O95343 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.14■□□□□ 0.01
SIX3O95343 TUBB3P1-201ENST00000405796 1332 ntBASIC15.14■□□□□ 0.01
SIX3O95343 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
SIX3O95343 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms