Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.98■□□□□ 0.47
CDKL5O76039 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CDKL5O76039 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 TNRC18P2-201ENST00000417666 2714 ntBASIC17.98■□□□□ 0.47
CDKL5O76039 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.98■□□□□ 0.47
CDKL5O76039 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC17.98■□□□□ 0.47
CDKL5O76039 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CDKL5O76039 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CDKL5O76039 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.98■□□□□ 0.47
CDKL5O76039 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CDKL5O76039 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CDKL5O76039 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 CLK3P2-201ENST00000427566 1453 ntBASIC17.97■□□□□ 0.47
CDKL5O76039 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC17.97■□□□□ 0.47
CDKL5O76039 RRP7BP-205ENST00000566851 833 ntBASIC17.97■□□□□ 0.47
CDKL5O76039 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 AC009118.2-201ENST00000613275 655 ntBASIC17.97■□□□□ 0.47
CDKL5O76039 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CDKL5O76039 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
CDKL5O76039 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CDKL5O76039 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CDKL5O76039 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC17.96■□□□□ 0.47
CDKL5O76039 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.96■□□□□ 0.47
CDKL5O76039 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
CDKL5O76039 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC17.96■□□□□ 0.47
CDKL5O76039 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC17.96■□□□□ 0.47
CDKL5O76039 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC17.96■□□□□ 0.47
CDKL5O76039 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.96■□□□□ 0.47
CDKL5O76039 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.96■□□□□ 0.47
CDKL5O76039 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CDKL5O76039 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 FAM86LP-201ENST00000478302 853 ntBASIC17.96■□□□□ 0.47
CDKL5O76039 AC093004.1-201ENST00000508850 424 ntBASIC17.96■□□□□ 0.47
CDKL5O76039 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.96■□□□□ 0.47
CDKL5O76039 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.96■□□□□ 0.47
CDKL5O76039 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC17.96■□□□□ 0.47
CDKL5O76039 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CDKL5O76039 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.96■□□□□ 0.47
CDKL5O76039 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms