Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
SGCEO43556 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
SGCEO43556 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
SGCEO43556 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
SGCEO43556 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
SGCEO43556 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
SGCEO43556 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.77□□□□□ -0.2
SGCEO43556 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 PON3-203ENST00000427422 894 ntTSL 3 BASIC13.77□□□□□ -0.21
SGCEO43556 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.77□□□□□ -0.21
SGCEO43556 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC13.77□□□□□ -0.21
SGCEO43556 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC13.77□□□□□ -0.21
SGCEO43556 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.77□□□□□ -0.21
SGCEO43556 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC13.77□□□□□ -0.21
SGCEO43556 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC13.77□□□□□ -0.21
SGCEO43556 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC13.77□□□□□ -0.21
SGCEO43556 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC13.77□□□□□ -0.21
SGCEO43556 AC013268.4-201ENST00000637413 2228 ntBASIC13.77□□□□□ -0.21
SGCEO43556 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 MYO15B-237ENST00000642007 4893 ntBASIC13.77□□□□□ -0.21
SGCEO43556 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
SGCEO43556 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
SGCEO43556 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC13.77□□□□□ -0.21
SGCEO43556 RPTOR-202ENST00000544334 5734 ntTSL 5 BASIC13.77□□□□□ -0.21
SGCEO43556 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.77□□□□□ -0.21
SGCEO43556 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
SGCEO43556 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SGCEO43556 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.76□□□□□ -0.21
SGCEO43556 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.76□□□□□ -0.21
SGCEO43556 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.76□□□□□ -0.21
SGCEO43556 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.76□□□□□ -0.21
SGCEO43556 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SGCEO43556 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.76□□□□□ -0.21
SGCEO43556 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC13.76□□□□□ -0.21
SGCEO43556 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.76□□□□□ -0.21
SGCEO43556 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC13.76□□□□□ -0.21
SGCEO43556 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.76□□□□□ -0.21
SGCEO43556 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.76□□□□□ -0.21
SGCEO43556 AL158211.3-201ENST00000607385 239 ntBASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms