Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC100757.3-201ENST00000622361 1406 ntBASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.5■□□□□ 0.07
VPS9D1Q9Y2B5 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 TREML5P-201ENST00000421694 576 ntBASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC092580.3-201ENST00000430932 139 ntBASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC087273.1-201ENST00000519368 529 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 IGHV3-42-201ENST00000520410 361 ntBASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 AL590560.3-201ENST00000623350 461 ntBASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 WASH3P-207ENST00000560956 1394 ntBASIC15.49■□□□□ 0.07
VPS9D1Q9Y2B5 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 AC023024.2-201ENST00000623561 1993 ntBASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 AC026616.1-201ENST00000523157 525 ntBASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 LINC01115-203ENST00000606068 577 ntBASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 AL844908.2-201ENST00000609461 460 ntBASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS9D1Q9Y2B5 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms