Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC19.84■□□□□ 0.77
SMC4Q9NTJ3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 AC098850.1-201ENST00000419919 790 ntBASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 CHCHD2P3-201ENST00000603038 451 ntBASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 YTHDF3-AS1-201ENST00000603538 718 ntBASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC19.83■□□□□ 0.77
SMC4Q9NTJ3 AL359258.3-201ENST00000622910 2331 ntBASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 DRD5P1-201ENST00000456605 1438 ntBASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 MROH4P-201ENST00000431302 1578 ntBASIC19.83■□□□□ 0.76
SMC4Q9NTJ3 TNRC18P2-201ENST00000417666 2714 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AGAP7P-201ENST00000582299 2062 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AGAP14-201ENST00000624701 2060 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 CALY-202ENST00000368555 783 ntTSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 GAPDHP40-201ENST00000505218 1006 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 API5-211ENST00000534695 560 ntTSL 5 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AC123567.1-201ENST00000548294 1261 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AC107373.2-201ENST00000607735 490 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AC093726.1-201ENST00000608064 963 ntBASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SMC4Q9NTJ3 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SMC4Q9NTJ3 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms