Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 MROH4P-201ENST00000431302 1578 ntBASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
ECHDC3Q96DC8 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 AC148477.4-201ENST00000613430 1793 ntBASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 RPL28-203ENST00000428193 573 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 RPL28-204ENST00000431533 590 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 KRT18P25-201ENST00000508931 1278 ntBASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 KRT17P8-201ENST00000540749 863 ntBASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 RPL28-207ENST00000558815 616 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 AL022328.1-201ENST00000610050 478 ntBASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 KRT8P14-201ENST00000414254 1442 ntBASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 AC023024.2-201ENST00000623561 1993 ntBASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
ECHDC3Q96DC8 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AC112492.5-201ENST00000421897 457 ntBASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 HLA-K-203ENST00000430151 1046 ntBASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AC106760.1-201ENST00000508690 800 ntBASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 CFL1-212ENST00000531413 636 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC15.39■□□□□ 0.05
ECHDC3Q96DC8 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms