Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 CD8B2-202ENST00000417670 633 ntBASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 NUS1P3-201ENST00000423502 862 ntBASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AP006547.1-201ENST00000563435 692 ntBASIC15.48■□□□□ 0.07
HMGB4Q8WW32 CYGB-203ENST00000589145 788 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AC068587.6-202ENST00000641839 5619 ntBASIC15.48■□□□□ 0.07
HMGB4Q8WW32 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
HMGB4Q8WW32 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 KRTAP10-13P-201ENST00000412914 571 ntBASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AC004945.1-201ENST00000416738 983 ntBASIC15.47■□□□□ 0.07
HMGB4Q8WW32 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AC069224.1-201ENST00000566372 1715 ntBASIC15.47■□□□□ 0.07
HMGB4Q8WW32 RN7SL48P-201ENST00000579283 293 ntBASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AL021578.1-201ENST00000613646 709 ntBASIC15.47■□□□□ 0.07
HMGB4Q8WW32 AL096828.3-201ENST00000615354 462 ntBASIC15.47■□□□□ 0.07
HMGB4Q8WW32 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.47■□□□□ 0.07
HMGB4Q8WW32 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 ACTG1P17-201ENST00000558391 1119 ntBASIC15.46■□□□□ 0.07
HMGB4Q8WW32 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
HMGB4Q8WW32 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms