Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AZGP1P1-201ENST00000411909 902 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC078819.1-201ENST00000547454 765 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC012085.1-201ENST00000548270 765 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TSN-201ENST00000389682 3420 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TP73-213ENST00000604479 1623 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 IMPDH1P4-201ENST00000445028 1534 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ZNF287-201ENST00000395824 3373 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ZNF792-201ENST00000404801 3888 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 COCH-203ENST00000460581 2688 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 DEK-201ENST00000244776 1441 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PML-210ENST00000563500 4502 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AL606760.3-201ENST00000569869 3591 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AL139010.1-201ENST00000454878 894 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 MIR6869-201ENST00000619434 62 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CICP13-201ENST00000422015 2789 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC005014.1-201ENST00000432006 2976 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 HIST3H2BA-201ENST00000436555 524 ntBASIC4.83□□□□□ -1.64
SYNE1Q8NF91 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC4.83□□□□□ -1.64
SYNE1Q8NF91 AC138932.1-201ENST00000534164 6830 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 TBC1D22A-203ENST00000380995 3934 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 AC092933.1-201ENST00000393644 945 ntBASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC4.82□□□□□ -1.64
SYNE1Q8NF91 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms