Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.11■□□□□ 0.33
CCDC60Q8IWA6 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 AC136621.1-201ENST00000624017 2304 ntBASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 AL583810.1-201ENST00000553344 1045 ntBASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 AC087481.3-201ENST00000602886 1894 ntBASIC17.1■□□□□ 0.33
CCDC60Q8IWA6 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 RPS15-201ENST00000233609 534 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC006001.1-201ENST00000325130 474 ntBASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 HLA-K-203ENST00000430151 1046 ntBASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 EIF3FP3-201ENST00000434851 1086 ntBASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 RPS15-205ENST00000586686 562 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 RPS15-208ENST00000591804 711 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 ETV2-208ENST00000621247 941 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 AC138951.2-201ENST00000623455 1161 ntBASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 REXO1L6P-201ENST00000603433 1515 ntBASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC60Q8IWA6 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms