Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PRAM1-201ENST00000423345 2667 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 GPHN-203ENST00000478722 4297 ntAPPRIS P3 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PER1-211ENST00000581082 4521 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 HTR2C-201ENST00000276198 4751 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PCDHGA6-201ENST00000517434 4775 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PRR29-202ENST00000412177 3127 ntAPPRIS P3 TSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 ASB2-201ENST00000315988 2743 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 FANCC-210ENST00000490972 2709 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PI4KAP2-211ENST00000486209 3213 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 HES2-202ENST00000377836 507 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CA15P1-201ENST00000481698 905 ntBASIC9.59□□□□□ -0.87
LINC00643Q86TS7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 SHPRH-202ENST00000367503 5237 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 LINC00869-206ENST00000610578 5734 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 AFDN-206ENST00000392112 7459 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 DAB2IP-202ENST00000309989 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CNKSR2-207ENST00000543067 4355 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 C5AR2-201ENST00000595464 6746 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 TMEM164-203ENST00000372072 4975 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 LIX1L-201ENST00000604000 3975 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 RIMS1-201ENST00000264839 7055 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 LMCD1-201ENST00000157600 8405 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC9.59□□□□□ -0.87
LINC00643Q86TS7 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC9.59□□□□□ -0.88
LINC00643Q86TS7 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 GZF1-202ENST00000377051 4740 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 HSPA2-201ENST00000247207 2767 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 GRIN2A-206ENST00000562109 4338 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 RASA4-203ENST00000461209 3244 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 DHX58-201ENST00000251642 2617 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 AC099489.1-203ENST00000598234 10568 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 KHSRPP1-201ENST00000427983 1768 ntBASIC9.58□□□□□ -0.88
LINC00643Q86TS7 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 Z98257.2-202ENST00000641138 1548 ntBASIC9.58□□□□□ -0.88
LINC00643Q86TS7 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SLC5A10-201ENST00000317977 4436 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 OR2A1-AS1-204ENST00000470435 602 ntBASIC9.58□□□□□ -0.88
LINC00643Q86TS7 STK19B-204ENST00000512515 211 ntBASIC9.58□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms