Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC10.52□□□□□ -0.72
CSMD3Q7Z407 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.72
CSMD3Q7Z407 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.72
CSMD3Q7Z407 NKILA-202ENST00000614771 2598 ntBASIC10.52□□□□□ -0.72
CSMD3Q7Z407 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.72
CSMD3Q7Z407 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 RN7SL258P-201ENST00000478664 300 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AL157792.1-201ENST00000488281 530 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 MIR3677-201ENST00000578964 60 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AL157813.1-201ENST00000612996 587 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AC084364.1-201ENST00000551967 1556 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AC005632.3-201ENST00000605544 308 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AC006158.1-201ENST00000610661 249 ntBASIC10.52□□□□□ -0.73
CSMD3Q7Z407 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC10.52□□□□□ -0.73
CSMD3Q7Z407 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 C2orf69P1-201ENST00000563532 1093 ntBASIC10.51□□□□□ -0.73
CSMD3Q7Z407 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 NAMA-206ENST00000605377 509 ntTSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 AC025262.2-201ENST00000623975 1056 ntBASIC10.51□□□□□ -0.73
CSMD3Q7Z407 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 FAM90A7P-201ENST00000382628 1395 ntBASIC10.51□□□□□ -0.73
CSMD3Q7Z407 FAM90A23P-201ENST00000400136 1395 ntBASIC10.51□□□□□ -0.73
CSMD3Q7Z407 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 IL9RP3-201ENST00000442856 1674 ntBASIC10.51□□□□□ -0.73
CSMD3Q7Z407 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 RPS15-201ENST00000233609 534 ntTSL 2 BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC10.51□□□□□ -0.73
CSMD3Q7Z407 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC10.51□□□□□ -0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms