Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 AL355306.1-201ENST00000415580 579 ntBASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 IGHV3-62-201ENST00000520057 340 ntBASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 AL135744.1-201ENST00000565098 629 ntBASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 RARRES2P8-201ENST00000566335 367 ntBASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PPP4R4Q6NUP7 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ZBED1P1-201ENST00000502364 1930 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 PMS2P4-201ENST00000412466 1052 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 TFAMP1-201ENST00000412727 736 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC005237.2-201ENST00000434368 219 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC099522.2-201ENST00000607001 744 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC021097.1-201ENST00000607902 574 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC026120.1-201ENST00000611536 926 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AP001282.1-201ENST00000531301 1499 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AC006504.5-208ENST00000588784 2401 ntBASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PPP4R4Q6NUP7 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms