Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.21■□□□□ 0.19
IRX4P78413 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 AC138969.2-201ENST00000532739 9932 ntBASIC16.21■□□□□ 0.19
IRX4P78413 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.21■□□□□ 0.19
IRX4P78413 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.21■□□□□ 0.19
IRX4P78413 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC16.21■□□□□ 0.19
IRX4P78413 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.21■□□□□ 0.19
IRX4P78413 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 RN7SL837P-201ENST00000463010 287 ntBASIC16.21■□□□□ 0.19
IRX4P78413 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.21■□□□□ 0.19
IRX4P78413 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 AC092658.1-201ENST00000505836 891 ntBASIC16.21■□□□□ 0.19
IRX4P78413 NOP2-211ENST00000540228 668 ntTSL 2 BASIC16.21■□□□□ 0.19
IRX4P78413 AL512361.1-201ENST00000554200 418 ntBASIC16.21■□□□□ 0.19
IRX4P78413 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
IRX4P78413 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.21■□□□□ 0.19
IRX4P78413 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.21■□□□□ 0.19
IRX4P78413 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.18
IRX4P78413 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
IRX4P78413 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.21■□□□□ 0.18
IRX4P78413 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
IRX4P78413 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.2■□□□□ 0.18
IRX4P78413 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
IRX4P78413 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
IRX4P78413 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.2■□□□□ 0.18
IRX4P78413 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.2■□□□□ 0.18
IRX4P78413 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC16.2■□□□□ 0.18
IRX4P78413 SPDYE18-201ENST00000510091 1050 ntBASIC16.2■□□□□ 0.18
IRX4P78413 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.2■□□□□ 0.18
IRX4P78413 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC16.2■□□□□ 0.18
IRX4P78413 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 SLC7A15P-201ENST00000424028 1363 ntBASIC16.2■□□□□ 0.18
IRX4P78413 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
IRX4P78413 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 SSR4P1-203ENST00000599569 2260 ntBASIC16.2■□□□□ 0.18
IRX4P78413 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
IRX4P78413 TMEM63C-201ENST00000298351 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
IRX4P78413 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.19■□□□□ 0.18
IRX4P78413 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.19■□□□□ 0.18
IRX4P78413 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.19■□□□□ 0.18
IRX4P78413 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.19■□□□□ 0.18
IRX4P78413 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
IRX4P78413 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 TTTY23B-201ENST00000442790 549 ntBASIC16.19■□□□□ 0.18
IRX4P78413 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
IRX4P78413 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.19■□□□□ 0.18
IRX4P78413 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms