Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 REXO1L5P-201ENST00000622260 2098 ntBASIC12.6□□□□□ -0.39
LMO4P61968 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.6□□□□□ -0.39
LMO4P61968 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 ANKRD30BP2-201ENST00000435744 1610 ntBASIC12.6□□□□□ -0.39
LMO4P61968 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 RPS3-201ENST00000278572 907 ntTSL 3 BASIC12.6□□□□□ -0.39
LMO4P61968 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC12.6□□□□□ -0.39
LMO4P61968 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 NME6-203ENST00000415644 849 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC12.6□□□□□ -0.39
LMO4P61968 KRT8P13-201ENST00000463294 1010 ntBASIC12.6□□□□□ -0.39
LMO4P61968 COX5BP1-201ENST00000507622 393 ntBASIC12.6□□□□□ -0.39
LMO4P61968 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.6□□□□□ -0.39
LMO4P61968 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC12.6□□□□□ -0.39
LMO4P61968 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC12.6□□□□□ -0.39
LMO4P61968 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 AC099398.1-201ENST00000567919 2776 ntBASIC12.6□□□□□ -0.39
LMO4P61968 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.6□□□□□ -0.39
LMO4P61968 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC12.6□□□□□ -0.39
LMO4P61968 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
LMO4P61968 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 DOC2GP-204ENST00000639052 2548 ntBASIC12.59□□□□□ -0.39
LMO4P61968 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
LMO4P61968 AC092850.2-201ENST00000623821 2697 ntBASIC12.59□□□□□ -0.39
LMO4P61968 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 AC055811.4-201ENST00000624039 1754 ntBASIC12.59□□□□□ -0.39
LMO4P61968 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC12.59□□□□□ -0.39
LMO4P61968 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC12.59□□□□□ -0.39
LMO4P61968 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC12.59□□□□□ -0.39
LMO4P61968 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.59□□□□□ -0.39
LMO4P61968 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC12.59□□□□□ -0.39
LMO4P61968 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC12.59□□□□□ -0.39
LMO4P61968 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
LMO4P61968 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC12.59□□□□□ -0.39
LMO4P61968 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LMO4P61968 AC104982.3-201ENST00000581995 514 ntBASIC12.59□□□□□ -0.39
LMO4P61968 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC12.59□□□□□ -0.39
LMO4P61968 AC005695.3-201ENST00000614522 232 ntBASIC12.59□□□□□ -0.39
LMO4P61968 AL008638.5-201ENST00000623814 1298 ntBASIC12.59□□□□□ -0.39
LMO4P61968 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
LMO4P61968 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC12.59□□□□□ -0.39
LMO4P61968 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
LMO4P61968 AL360270.3-201ENST00000609118 1348 ntBASIC12.59□□□□□ -0.39
LMO4P61968 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
LMO4P61968 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
LMO4P61968 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
LMO4P61968 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
LMO4P61968 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.58□□□□□ -0.39
LMO4P61968 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.58□□□□□ -0.39
LMO4P61968 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
LMO4P61968 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 CICP11-201ENST00000434745 2827 ntBASIC12.58□□□□□ -0.4
LMO4P61968 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
LMO4P61968 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
LMO4P61968 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms