Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC10.98□□□□□ -0.65
CKS1BP61024 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC10.98□□□□□ -0.65
CKS1BP61024 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
CKS1BP61024 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
CKS1BP61024 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC10.98□□□□□ -0.65
CKS1BP61024 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 HS3ST1-201ENST00000002596 8031 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC10.98□□□□□ -0.65
CKS1BP61024 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC10.98□□□□□ -0.65
CKS1BP61024 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC10.98□□□□□ -0.65
CKS1BP61024 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC10.98□□□□□ -0.65
CKS1BP61024 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC10.97□□□□□ -0.65
CKS1BP61024 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC10.97□□□□□ -0.65
CKS1BP61024 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 PTCHD3P3-201ENST00000403073 906 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC10.97□□□□□ -0.65
CKS1BP61024 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC10.97□□□□□ -0.65
CKS1BP61024 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC10.97□□□□□ -0.65
CKS1BP61024 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC10.97□□□□□ -0.65
CKS1BP61024 AC092119.3-201ENST00000612618 583 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC10.97□□□□□ -0.65
CKS1BP61024 AC010654.1-201ENST00000615722 808 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 GGTLC5P-201ENST00000617623 998 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 AC129492.6-201ENST00000611383 1305 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC10.97□□□□□ -0.65
CKS1BP61024 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 TP73-211ENST00000604074 4806 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 AC092053.3-201ENST00000641308 4975 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 TRAK1-201ENST00000327628 5293 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
CKS1BP61024 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC10.97□□□□□ -0.65
CKS1BP61024 U82695.1-201ENST00000635752 1889 ntBASIC10.97□□□□□ -0.65
CKS1BP61024 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 SDC1-202ENST00000381150 3291 ntAPPRIS P1 TSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC10.97□□□□□ -0.65
CKS1BP61024 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 NEK4-201ENST00000233027 6057 ntAPPRIS P2 TSL 1 (best) BASIC10.97□□□□□ -0.65
CKS1BP61024 FNIP1-205ENST00000615660 6589 ntTSL 5 BASIC10.97□□□□□ -0.65
CKS1BP61024 EEF2K-201ENST00000263026 7388 ntAPPRIS P1 TSL 5 BASIC10.96□□□□□ -0.65
CKS1BP61024 C1orf167-202ENST00000433342 4545 ntAPPRIS P5 TSL 5 BASIC10.96□□□□□ -0.65
CKS1BP61024 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC10.96□□□□□ -0.65
CKS1BP61024 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CKS1BP61024 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS1BP61024 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS1BP61024 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
CKS1BP61024 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC10.96□□□□□ -0.65
CKS1BP61024 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC10.96□□□□□ -0.65
CKS1BP61024 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC10.96□□□□□ -0.65
CKS1BP61024 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC10.96□□□□□ -0.65
CKS1BP61024 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC10.96□□□□□ -0.65
CKS1BP61024 OCRL-201ENST00000357121 5138 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
CKS1BP61024 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC10.96□□□□□ -0.65
CKS1BP61024 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC10.96□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms